Scripts

1. removesmalls

Script removes contigs smaller than the selected size (n).

perl /opt/scripts/removesmalls.pl <n> <input>.fasta > <out>.fasta

1. filterfastarange

perl /opt/scripts/filterfastarange.pl <min> <max> <input>.fasta > <out>.fasta

1. blast_parse.pl

perl /opt/script/blastparse.pl <input> > <out>

To change parameters you have to copy the script to your directory and edit the file.